Everyone who deals with CP2K applications faces the problem of their compilation which appears to be rather challenging. Several available guides propose different compilation instructions but the choice of the best one is not evident. Here we provide a guide that would allow you to develop your own CP2K build protocol.
Visual approach to construction of &QMMM section of CP2K input file
Published in Ноябрь 16th, 2011
Posted by Peter Mamonov in Без рубрики
The script is intended to be used from PyMol molecular visualization system and allows one to generate &QM_KIND, &LINK and &CELL parts of CP2K input easily. Given a molecular object name and QM part selection name (which can be defined using either approach available in PyMol) it generates output file with corresponding input groups. To […]
Gaussian Cube files loader
Published in Ноябрь 15th, 2011
Posted by Peter Mamonov in Без рубрики
This Python module parses Gaussian cube files, produced by quite a few QM software packages, and makes volume data available as numpy array as well as some associated properties. Look at this example for api reference: Here is the module, save it as «load_cube.py» for use as in the previous example:
Метки
Последние записи
- MD Practice #1 — making toy force field
- Теория молекулярно-динамических расчетов (видео)
- Малый практикум по квантовой химии
- Compiling CP2K
- OPLS-AA patch for different types of molecules
- Reaction-diffusion systems in 2D space with python
- Constructing discrete Laplacian via sparse matrix
- All-atom automatic OPLS-AA topology generator
- Scanning PES ab initio and in MM
- Quantum chemistry information page
Комментарии
- mj.rezayani in All-atom automatic OPLS-AA topology…
- mozhdeh in All-atom automatic OPLS-AA topology…
- bakhtawer in All-atom automatic OPLS-AA topology…
- Wei Wu in OPLS-AA patch for different types o…
- anpu in All-atom automatic OPLS-AA topology…
- anpu in All-atom automatic OPLS-AA topology…
- mjijy in Python membrane generator for MD si…
- Jacquie in All-atom automatic OPLS-AA topology…
- forex forum in Python membrane generator for MD si…
- Chandra sekhar in All-atom automatic OPLS-AA topology…