Everyone who deals withCP2K applications faces the problem of their compilation which appears to be rather challenging. Several available guides propose different compilationinstructionsbut the choice of the best one is not evident. Here we provide a guide that would allow you to develop your own CP2K build protocol.
Visual approach to construction of &QMMM section of CP2K input file
Published in Ноябрь 16th, 2011
Posted by Peter Mamonov in ??? ???????
The script is intended to be used from PyMol molecular visualization system and allows one to generate &QM_KIND, &LINK and &CELL parts of CP2K input easily. Given a molecular object name and QM part selection name (which can be defined using either approach available in PyMol) it generates output file with corresponding input groups. To […]
Gaussian Cube files loader
Published in Ноябрь 15th, 2011
Posted by Peter Mamonov in ??? ???????
This Python module parses Gaussian cube files, produced by quite a few QM software packages, and makes volume data available as numpy array as well as some associated properties. Look at this example for api reference: Here is the module, save it as «load_cube.py» for use as in the previous example:
Метки
Последние записи
- MD Practice #1 — making toy force field
- ?????? ???????????-???????????? ???????? (?????)
- ????? ????????? ?? ????????? ?????
- Compiling CP2K
- OPLS-AA patch for different types of molecules
- Reaction-diffusion systems in 2D space with python
- Constructing discrete Laplacian via sparse matrix
- All-atom automatic OPLS-AA topology generator
- Scanning PES ab initio and in MM
- Quantum chemistry information page
Комментарии
- SergGep in ?????? ?????????? ??????? ? matplot…
- web page in ?????? ???????????-???????????? ???…
- sergey in All-atom automatic OPLS-AA topology…
- ?? ????? in ?????? ???????????-???????????? ???…
- user in All-atom automatic OPLS-AA topology…
- best menu price… in ?????? ???????????-???????????? ???…
- Anggon Barua in All-atom automatic OPLS-AA topology…
- colon cancer cu… in ?????? ???????????-???????????? ???…
- game outsourcin… in ?????? ???????????-???????????? ???…
- jvaldiviezo in All-atom automatic OPLS-AA topology…